Neuroinformatics Center

Journal Papers

2010

• A fast BiCG solver for the isotropic Poisson equation in the forward EIT problem in cylinder phantoms
  V. Volkov, A. Zherdetsky, S. I. Turovets and A. Malony
  Journal of Physics: Conference Series, 2010
  [ web ]
• Instrumentation for Low Frequency EIT Studies of the Human Head and its Validation in the Phantom Experiments
  B. Esler, T. Lyons, S. I. Turovets and D. Tucker
  Journal of Physics: Conference Series, 2010
  [ web ]

2007

• Automated protocol for evaluation of electromagnetic component separation (APECS): Application of a framework for evaluating statistical methods of blink extraction from multichannel EEG
  R. M. Frank and G. A. Frishkoff
  Clinical Neurophysiology, 2007
• A framework to support automated ERP pattern classification and labeling.
  G. A. Frishkoff, R. M. Frank, J Rong, D. Dou, J. Dien and L. Halderman
  Computational Intelligence and Neuroscience , 2007

2006

• Noninvasive conductivity extraction for high-resolution EEG source localization
  A. Salman, S. I. Turovets, A. Malony, P. Poolman, C. Davey, J. Eriksen, and D. M. Tucker
  Advances in Clinical Neuroscience and Rehabilitation, 6(1), pp. 27-28, March 2006.

Conference Papers

2011

• Computational Modeling of Human Head Electromagnetics for Source Localization of Milliscale Brain Dynamics
  Allen D. Malony, Adnan Salman, Sergei Turovets, Don Tucker, Vasily Volkov, Kai Li, Jung Eun Song, Scott Biersdorff, Colin Davey, Chris Hoge and David Hammond
  Accepted to Medicine Meets Virtual Reality (MMVR) , Feburary 2011
  [ pdf ]

2010

• The MREI/EEG phantom experiments
  Sergei Turovets, Young Tae Kim, Pavel Govyadinov, Eung Je Woo, and Don Tucker
  Workshop on MR-based Impedance Imaging, December 2010, Korea
• Towards combined neuroimaging modalities: EEG and bounded EIT
  S.I. Turovets, A. Salman, K. Li, A. Malony and D. M. Tucker
  International Congress of Clinical Neurophysiology, October 2010, Japan
• Computational studies of NIRS using layered slab and MRI based head models
  S. I. Turovets D. M. Tucker
  International Congress of Clinical Neurophysiology, October 2010, Japan
• Towards Subject Specific Head Models for Improved High-Resolution EEG
  Turovets, S., Salman, A., Li, K., Malony, A., Tucker, D
  Annual Meeting of the Organization for Human Brain Mapping, June 2010

2009

• A 3D Vector-Additive Iterative Solver for the Anisotropic Inhomogeneous Poisson Equation in the Forward EEG problem
  V. Volkov, A. Zherdetsky, S. I. Turovets and A. Malony
  International Conference on Computational Science (ICCS 2009), May 2009
• An Open Domain-extensible Environment for Simulation-based Scientific Investigation (ODESSI)
  A. Salman, A. Malony and M. Sottile
  International Conference on Computational Science (ICCS 2009), May 2009
• Bounded Electrical Impedance Tomography for Noninvasive Conductivity Estimation of Human Head Tissues
  S. I. Turovets, P. Poolman, A. Salman, K. Li, A. Malony and D. M. Tucker
  Electrical Impedance Tomography Conference (EIT 2009), June 2009
• Development of Neural Electromagnetic Ontologies (NEMO): Representation and integration of event-related brain potentials
  G. A. Frishkoff, D. Dou, R. M. Frank, P. LePendu and H. Liu
  International Conference on Biomedical Ontologies (ICBO09), July 2009

2008

• NIR Imaging of Labeled Human Neural Tissue: Computational Feasibility Studies.
  S. I. Turovets and D. M. Tucker
  Biomedical Optics, Optical Society of America Technical Digest, 2008
• Modified Lock-in Detection for Extraction of Impressed EEG Signals in Lowfrequency Bounded-EIT Studies of the Human Head
  P. Poolman, R. M. Frank and S. I. Turovets
  International Congress on Image and Signal Processing, 2008
• Instrumentation and Signal Processing for Low-frequency Bounded-EIT Studies of the Human Head
  P. Poolman, S. I. Turovets, R. M. Frank, and G. S. Russell.
  IEEE Instrumentation and Measurement Technology Conference, 2008
• On the Role of Skull Parcellation in the Computational Modeling of Human Head Conductivity
  A. Salman, A. Malony, S. I. Turovets and D. M. Tucker
  Electrical Impedance Tomography Conference (EIT Conference 2008), June, 2008
• Conductivity Analysis for High-Resolution EEG
  S. I. Turovets, P. Poolman, A. Salman, A. Malony and D. M. Tucker
  International Conference on BioMedical Engineering and Informatics (BMEI) 2008
• Semantic data modeling: Methods for ontology-based queries and an application to brainwave data.
  P. LePendu, D. Dou, G. A. Frishkoff and J. Rong
  International Conference on Scientific and Statistical Database Management (SSDBM-08), 2008

2007

• Use of Parallel Simulated Annealing for Computational Modeling of Human Head Conductivity
  A. Salman, A. Malony, S. I. Turovets and D. M. Tucker
  International Conference on Computational Science (ICCS 2007), July 2007. (best paper award)
• Development of NeuroElectroMagnetic Ontologies (NEMO): A framework for mining brain wave ontologies
  D. Dou, G. A. Frishkoff, J. Rong, R. M. Frank, A. Malony and D. M. Tucker
  International Conference on Knowledge Discovery and Data Mining (KDD2007), 2007
• A semi-automatic framework for mining ERP patterns.
  J. Rong, D. Dou, G. A. Frishkoff, R. M. Frank, A. Malony and D. M. Tucker
  IEEE International Symposium on Data Mining and Information Retrieval (DMIR-07), 2007

2006

• A Multiscale Morphological Approach to Topology Correction of Cortical Surfaces
  K. Li, A. Malony and D. M. Tucker
  International Workshop on Medical Imaging and Augmented Reality (MIAR 2006)
• Automatic Brain MR Image Segmentation by Relative Thresholding and Morphological Image Analysis
  K. Li, A. Malony, and D. M. Tucker
  International Conference on Computer Vision Theory and Applications (VISAPP), 2006
• Intracranial Hematoma Detection Using Near Infrared Light and Local Reference Method
  S. I. Turovets, P. S. Lovely and D. M. Tucker
  Optical Society of America Biomedical Topical Meeting, 2006
• Anatomically Constrained Conductivity Estimation of the Human Head Tissues in Vivo: Computational Procedure and Preliminary Experiments
  S. I. Turovets, A. Salman, A. Malony, J. Eriksen and D. M. Tucker
  7th Electrical Impedance Tomography (EIT) Conference, 2006
• Parallel ICA Methods for EEG Neuroimaging
  D. B. Keith, C. Hoge, R. M. Frank and A. D. Malony
  IEEE International Parallel & Distributed Processing Symposium (IPDPS), 2006
  [ pdf ]

2005

• Computational Modeling of Human Head Conductivity
  A. Salman, S. I. Turovets, A. Malony, J. Eriksen and D. M. Tucker
  International Conference on Computational Science (ICCS 2005), May 2005
• Multi-cluster, Mixed-mode Computational Modeling of Human Head Conductivity
  A. Salman, S. I. Turovets, A. Malony and V. Volkov
  International Workshop on OpenMP (IWOMP), June 2005. (best paper award)

2004

• A framework for evaluating ICA methods of artifact removal from multichannel EEG.
  K. Glass, G. A. Frishkoff, R. M. Frank, C. Davey, J. Dien, A Malony and D. M. Tucker
  Proceedings of ICA 2004 Conference, Granada, Spain.

Presented Posters

• A Matlab based solver for the MREIT forward problem
  V.M. Volkov, A.A. Zherdetskij, S.I. Turovets, and A.D. Malony
  Workshop on MR-based Impedance Imaging, December 2010, Korea
• Source Localization of Dense Array EEG for Brain Dynamics
  J. Song, S. Turovets, D. Tucker, P. Luu and C. Davey
  Workshop on MR-based Impedance Imaging, December 2010, Korea
• Cortical Graph Smoothing Priors for EEG Source Localization
  David K. Hammond, Allen D. Malony and Don Tucker
  Northwest Computational Neuroscience Connection, Seattle, October 2010
• Modeling Human Head Electromagnetics on the Cell Broadband Engine
  A. Salman, A. Malony, S. I. Turovets, A. Morris, and D. M. Tucker
  Workshop on Solving Computational Challenges in Medical Imaging, Seattle, 2007.
• Automated Protocol for ERP Component Separation (APECS): Effects of Spatial Sampling on Blink Removal using Independent Components Analysis
  R. M. Frank, G. A. Frishkoff and J. Dien
  [ pdf ]
• APECS: A framework for evaluating ICA removal of artifacts
  R. M. Frank, G. A. Frishkoff, K. A. Glass, C. Davey, J. Dien, A. D. Malony and D. M. Tucker
  [ pdf ]
• The Fast ICA Algorithm
  R.M. Frank and K. Glass
  [ pdf ]
• Blind separation of blinks from EEG data : Evaluation of Infomax and Fast ICA algorithms
  R. M. Frank, G. A. Frishkoff, C. Davey, K. Glass, D. M. Tucker
  [ pdf ]
• Finite Elements and Finite Difference Human Head Modeling: Forward Problem
  S. Turovets, K. Glass, A. Malony, V. Volkov
  Telemedicine Advanced Technology Research Center (TATRC) Meeting, University of Oregon, Eugene, Oregon, November 24, 2003.
  [ pdf ]

PhD Theses

• A Software Framework for Simulation-based Scientific Investigations
  A. Salman
  PhD thesis, University of Oregon, Dept. Computer and Information Science, 2010
  [ pdf ]
• Neuroanatomical Segmentation in MRI Exploiting A Priori Knowledge.
  Kai Li
  PhD thesis, University of Oregon, Dept. Computer and Information Science, 2007