Scientific Applications - Revision history

Shirley: /* [http://www.ks.uiuc.edu/Research/namd/ NAMD] */

2009-07-14T21:13:36Z

‎[http://www.ks.uiuc.edu/Research/namd/ NAMD]

Shirley at 21:01, 14 July 2009

2009-07-14T21:01:10Z

Scottb: /* [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] */

2008-09-03T19:38:40Z

‎[http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D]

Scottb: /* [http://lca.ucsd.edu/portal/software/enzo ENZO] */

2008-05-16T00:04:52Z

‎[http://lca.ucsd.edu/portal/software/enzo ENZO]

Scottb at 18:54, 8 February 2008

2008-02-08T18:54:44Z

Scottb at 18:54, 8 February 2008

2008-02-08T18:54:01Z

Scottb: /* [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] */

2008-01-18T19:33:23Z

‎[http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D]

Scottb at 01:16, 18 January 2008

2008-01-18T01:16:44Z

Scottb at 00:56, 17 January 2008

2008-01-17T00:56:56Z

Scottb: New page: == [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] == NEMO3D has been running as an educational version in nanoHUB for a year with executions that take a few seconds. This version has...

2008-01-17T00:56:44Z

New page: == [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] == NEMO3D has been running as an educational version in nanoHUB for a year with executions that take a few seconds. This version has...

New page

== [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] ==
NEMO3D has been running as an educational version in nanoHUB for a year with executions that take a few seconds. This version has been used by over 600 people. NEMO3D is expected to be running soon on large systems with executions that will require hours of CPU time with hundreds of users. The code is currently being ported to the dual-core Cray XT3 at [http://www.psc.edu PSC].

== [http://lca.ucsd.edu/portal/software/enzo ENZO] ==
ENZO is an adaptive mesh refinement (AMR), grid-based hybrid code (hydro + N-Body) which is designed to do simulations of cosmological structure formation. Understanding the performance of AMR applications on distributed memory architectures is challenging, due to the dynamic multilevel data structures and variety of communication patterns involved.

== [http://www.ks.uiuc.edu/Research/namd/ NAMD] ==
Development of NAMD is a collaborative effort between the Theoretical and Computational biophysics Group (TCBG) and the Parallel Programming Laboratory (PPL) at UIUC and is based on PPL’s Charm++ parallel programming system, which has extensive support for latency tolerance and dynamic load balancing. Efficient, lightweight communication is critical for Charm++ and the applications built within this framework.

@@ Line 9: / Line 9: @@
 == [http://www.ks.uiuc.edu/Research/namd/ NAMD] ==
-Development of NAMD is a collaborative effort between the Theoretical and Computational biophysics Group (TCBG) and the Parallel Programming Laboratory (PPL) at UIUC and is based on PPL’s Charm++ parallel programming system, which has extensive support for latency tolerance and dynamic load balancing. Efficient, lightweight communication is critical for Charm++ and the applications built within this framework.
+Development of NAMD is a collaborative effort between the Theoretical and Computational Biophysics Group (TCBG) and the Parallel Programming Laboratory (PPL) at UIUC and is based on PPL’s Charm++ parallel programming system, which has extensive support for latency tolerance and dynamic load balancing. Efficient, lightweight communication is critical for Charm++ and the applications built within this framework.
 * [[NAMDPerformance | Performance Results]]

@@ Line 3: / Line 3: @@
 NEMO3D calculates eigenstates in (almost) arbitrarily shaped semiconductor structures in the typical column IV and III-V materials. It has been running as an educational version in [https://www.nanohub.org/ nanoHUB] for a year with executions that take a few seconds. This version has been used by over 600 people. It is expected to be running soon on large systems with executions that will require hours of CPU time with hundreds of users. The code is currently being ported to the dual-core Cray XT3 at [http://www.psc.edu PSC].
 * [[NEMO3DDiscussion | Discussion/Notes]]
-* [[NEMO3DPerformance | Performance Results]]
+* [[NEMO3D | Performance Results]]
 == [http://lca.ucsd.edu/portal/software/enzo ENZO] ==

@@ Line 8: / Line 8: @@
 ENZO is an adaptive mesh refinement (AMR), grid-based hybrid code (hydro + N-Body) which is designed to do simulations of cosmological structure formation. Understanding the performance of AMR applications on distributed memory architectures is challenging, due to the dynamic multilevel data structures and variety of communication patterns involved.
 * [[ENZODiscussion | Discussion/Notes]]
-* [[ENZOPerformance | Performance Results]]
+* [[ENZO | Performance Results]]
 == [http://www.ks.uiuc.edu/Research/namd/ NAMD] ==

@@ Line 1: / Line 1: @@
-__FOCTOC__
+__FORCETOC__
 == [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] ==
 NEMO3D calculates eigenstates in (almost) arbitrarily shaped semiconductor structures in the typical column IV and III-V materials. It has been running as an educational version in [https://www.nanohub.org/ nanoHUB] for a year with executions that take a few seconds. This version has been used by over 600 people. It is expected to be running soon on large systems with executions that will require hours of CPU time with hundreds of users. The code is currently being ported to the dual-core Cray XT3 at [http://www.psc.edu PSC].

← Older revision		Revision as of 18:54, 8 February 2008
Line 1:		Line 1:
		+	__FOCTOC__
	== [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] ==		== [http://cobweb.ecn.purdue.edu/~gekco/nemo3D/ NEMO3D] ==
	NEMO3D calculates eigenstates in (almost) arbitrarily shaped semiconductor structures in the typical column IV and III-V materials. It has been running as an educational version in [https://www.nanohub.org/ nanoHUB] for a year with executions that take a few seconds. This version has been used by over 600 people. It is expected to be running soon on large systems with executions that will require hours of CPU time with hundreds of users. The code is currently being ported to the dual-core Cray XT3 at [http://www.psc.edu PSC].		NEMO3D calculates eigenstates in (almost) arbitrarily shaped semiconductor structures in the typical column IV and III-V materials. It has been running as an educational version in [https://www.nanohub.org/ nanoHUB] for a year with executions that take a few seconds. This version has been used by over 600 people. It is expected to be running soon on large systems with executions that will require hours of CPU time with hundreds of users. The code is currently being ported to the dual-core Cray XT3 at [http://www.psc.edu PSC].

← Older revision		Revision as of 00:56, 17 January 2008
Line 6:		Line 6:

	== [http://www.ks.uiuc.edu/Research/namd/ NAMD] ==		== [http://www.ks.uiuc.edu/Research/namd/ NAMD] ==
−	Development of NAMD is a collaborative effort between the Theoretical and Computational biophysics Group (TCBG) and the Parallel Programming Laboratory (PPL) at UIUC and is based on PPL’s Charm++ parallel programming system, which has extensive support for latency tolerance and dynamic load balancing. Efficient, lightweight communication is critical for Charm++ and the applications built within this framework.	+	Development of NAMD is a collaborative effort between the Theoretical and Computational biophysics Group (TCBG) and the Parallel Programming Laboratory (PPL) at UIUC and is based on PPL’s Charm++ parallel programming system, which has extensive support for latency tolerance and dynamic load balancing. Efficient, lightweight communication is critical for Charm++ and the applications built within this framework.